Check out Python’s powerful new linters and profiling tools, and learn how virtual environments can save you time and trouble ...

The FASTA File Format Converter is a simple online tool that helps you turn your FASTA files into other formats with just a few clicks. You don’t need to install ...

We are living in an era where biology has become synonymous with big data due to the ever-increasing amount of data being generated by technologies such as next-generation sequencing. Bioinformatics ...

From the publication pyPept: a python library to generate atomistic 2D and 3D representations of peptides Journal of Cheminformatics, 2023, 15:79 Authors: Rodrigo Ochoa, J.B Brown, Thomas Fox pyPept ...

Our GenBank to FASTA Converter is a seamless web-based utility designed for molecular biologists and bioinformaticians. It efficiently transforms annotated GenBank files into the simplified FASTA ...

For MCscan to work, we'll need sequences (FASTA format) and coordinates (BED format). For this example, let's get these data from Phytozome. The first time you try to run the fetch command, the script ...

The development of advanced sequencing technologies has made it easier to obtain diverse templates for specific targets, such as nucleotide sequences in NCBI 1, 16S ribosomal RNA gene sequences in ...

Circular RNAs (circRNAs) are known to act as important regulators of the microRNA (miRNA) activity. Yet, computational resources to identify miRNA:circRNA interactions are mostly limited to already ...

Mapping of short metagenomic (or metatranscriptomic) read data to reference isolate or single-cell genomes or metagenome-assembled genomes (MAGs) to assess microbial population relative abundance ...

The term ‘RNA-seq’ refers to a collection of assays based on sequencing experiments that involve quantifying RNA species from bulk tissue, single cells or single nuclei. The kallisto, bustools and ...