The only way to connect to our clusters is by secure shell (ssh), e.g. from a Linux/UNIX system: ssh -l your_username carya.rcdc.uh.edu ssh -l your_username sabine ...

We will demonstrate an example run of DIAMOND on a small dataset here. For this, we assume the tool has been installed according to the installation instructions. First we will download the SCOPe ...

Biological invasions are a major global threat and understanding what promotes their success is crucial to developing mitigating policies. While properties of the invasive species or environment have ...

If you're not in the above directory, then relocate yourself to it. Now, create a Trinotate/ directory and relocate to it. We'll use this as our Trinotate computation workspace. TransDecoder is a tool ...

Long intergenic non-coding RNAs (lincRNAs) are an abundant and functionally diverse class of eukaryotic transcripts. Reported lincRNA repertoires in mammals vary, but are commonly in the thousands to ...